PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G138900.1.p
Common NameGLYMA_03G138900, LOC100819966
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 285aa    MW: 32081.8 Da    PI: 5.6734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G138900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-202978255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Glyma.03G138900.1.p 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                         69****999.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.16E-322888No hitNo description
PfamPF008472.5E-132978IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-212987IPR016177DNA-binding domain
PROSITE profilePS5103222.7482986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-302987IPR001471AP2/ERF domain
SMARTSM003806.7E-382992IPR001471AP2/ERF domain
PRINTSPR003672.2E-103041IPR001471AP2/ERF domain
PRINTSPR003672.2E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDTCKKFPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYLNLPHLQP RSTSTTITSS GKFKWFPSKN FISMFPSCGL  120
LNVNAQPSVH LIHQRLQELK RNSVVSQSPP NSSNEPKEET QTVGSKKDGE NPPKDDQMLS  180
EEVLGDLQEK PQIDLHEFLQ QMGILKEERE SERTDSSGSS STMPEALLRD DNDHHLGVFS  240
DNSVNWEALI DMHGIAGIQE SEVTQLEAYD PNDDLTFSTS IWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350460.0AC235046.1 Glycine max strain Williams 82 clone GM_WBb0017A04, complete sequence.
GenBankAC2354520.0AC235452.1 Glycine max strain Williams 82 clone GM_WBb0166E13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520524.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX53e-89DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A0B2PIG40.0A0A0B2PIG4_GLYSO; Dehydration-responsive element-binding protein 2F
TrEMBLI1JNE90.0I1JNE9_SOYBN; Uncharacterized protein
STRINGGLYMA03G29530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-72ERF family protein